CompareProspector Search
Please don't submit more than one job at a time!!
Submit another job only if one of the following is true:
1. You have received answer from your previous submission.
2. Your previous job was submitted more than one day ago.
User information
Please specify your email so we can send the search result to you
Run information
Please specify a run name (will be included in the result email)
Input Sequences
please specify a file
Cross-species Conservation
Input Percent Identity Values
Or
window size (between 6 and 50)
and
alignment file in mfa format
high conservation thresold (between 0 and 1)
low conservation threshold (between 0 and 1)
If you do not want to decrease the threshold cutoff in the motif-search, please do not specify the low threshold
Motif Model
Width of the motif block
5
6
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20
Motif occurs in
not all
each
input sequences
Motif occurs on
forward strand
both strands
of input sequences
Background Model
You can use the input sequence as background if you don't specify any of the following.
Or you can specify a background sequence file
Or paste background sequences below:
Or use the precomputed genome background model
Human 1000bp upstream
Human 5000bp upstream
Mouse 1000 bp upstream
Mouse 5000bp upstream
C. elegans 1000 upstream
Result Display
Report top
1
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15
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25
motifs found.