tree.C


o treeClass::treeClass
o treeClass::printTrees
o treeClass::findElementsInTree
returns the indices of nodes in current tree
o treeClass::removeTree
moves the nodes in the (this) connected component to replacementTree connected component.
o nodeClass::addNodeLink
adds a link, increments the owning protein's numLinks by 1
o nodeClass::removeAllLinks
removes all edges going out of this node, resets its edge parameters accordingly
o nodeClass::markAllNodesInTheTree
nodeColor of visited nodes becomes 1.
o nodeClass::printTree
prints the index of every node in the same tree as (this)
o nodeClass::removeConnectionTo
removes link from (this) to (toNode).
o connected
returns true if n1 is connected to n2
o findNeighbors
returns neighbors of node # startNode
o findNumNeighbors
returns num neighbors of node # i
o findNeighborsAndTransitionProbabilities
finds and returns both node indices that the input node is connected to, as well as the edge weights
o removeLinkBetweenAndUpdateTrees
removes link between node n1 and n2.
o findBiggestCC
returns the pointer to the largest connected component, if there are multiple such connected components returns NULL

Alphabetic index



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