In file MCSimulation.C:(Protein* startP, const int maxIter,
Protein* foldedP,
Protein* unfoldedP,
float minDistFolded,
float minDistUnfolded)
does MC from startNodeIndex.
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does MC from startNodeIndex. stops when it gets close to either
foldedStateIndex or unfoldedStateIndex. Does a max. of maxIter
iterations.
returns foldingResult.
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