In file roadmapConstruction.C:(int* numberOfNodes,
const int numRandomNodes,
int* nativeNodeIndex,
int* unfoldedStateIndex,
Protein** allNodes, int MAXNODES,
bool totallyRandom)
if (totallyRandom) is false, reads presampled conformations and add in 1 nodes at -50,-50.
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if (totallyRandom) is false,
reads presampled conformations and add in 1 nodes at -50,-50.
creates random samples,
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