In file ioRoutines.C:

void printCloseNodeIndices

(int foldedStateIndex,
  int unfoldedStateIndex,
  float minDistFolded,
  float minDistUnfolded,
  Protein** allNodes, int numNodes,
  int runIndex)

prints the indices of nodes that are close to the folded or unfolded nodes in a file, in 1-based format.

Documentation

prints the indices of nodes that are close to the folded or unfolded nodes in a file, in 1-based format.

the filename is sprintf("close2{Folded|Unfolded}%d_%d.txt", numNodes, runIndex);

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