roadmapConstruction.C


o sampleAllNodes
if (totallyRandom) is false, reads presampled conformations and add in 1 nodes at -50,-50.
o createRandomNodes
o sampleGivenCoord
o sampleGivenCoords
creates given nodes
o kNNLinkNode
connects node # nodeIndex to k nearest neighbors, unless it is already connected to at least k nearest neighbors
o linkNodes
links all nodes, each to kNN other nodes
o makeLinkBetweenNodes
connects 2 nodes (if they are not already connected), and updates the tree structure arising from the merge.
o addNode2Forest
node # count is not connected to the rest of the roadmap, creating a tree for itself alone
o findTransitionProbability
assigns tr.
o computeTransitionProbabilities
returns maxNumNeighbors of any node

Alphabetic index



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