In file rmsd_nearestNeighbors.C:

void findNearestNeighbors

(int nodeIndex, int numNodes,
  Protein* allNodes[],
  unsigned int k)

finds and returns k nearest nodes of a given node.

Documentation

finds and returns k nearest nodes of a given node. does optimal Xformation before computing distance(rmsd). put the result in nn_idx, and dists arrays. These arrays should have been initialized already.

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