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printPCNNFile - prints cA coordinates to a file, in PCNN format.
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readOneLineOfPCNNFile - assumes that fin points to a new line of fin, with numLinks numbers (in 1-based) corresponding to the nearest neighbors of currentNodeIndex.
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linkNodesStatPrintOuts-
printPfolds - normally this function should be in analysisC but for some reason it does not link there
Alphabetic index
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