protein.C


o extStr
xtern void reportTimes (struct tms start, struct tms end);
o Protein::createGivenConfig
o Protein::distanceSquaredBetweenCentroids
i (and j) is the i'th centroid, starting to count from the first centroid of the first non-loop vector.
o Protein::computeEnergy
computes the energy
o Protein::getEnergy
note: normally resize should also initialize, but I couldn't get it working, maybe since because this is a multidimensional vector
o Protein::getExclusionEnergy
o Protein::getNumLinks
o Protein::setNumLinks
o Protein::getMyNode
accessor
o Protein::probabilisticAcceptConformation
returns true if configuration does not collide with itself, and is low than a probabilistically generated energy threshold.
o Protein::createNonRandomConfig
creates a config.
o Protein::appendCNNFile

Alphabetic index



This page was generated with the help of DOC++.