In file roadmapConstruction.C:

void initNativeStructure

(int* numberOfNodes,
  const char* relDir,
  const char* protein_name,
  int endNodeIndex)

reads native structure, stores it in allNodes[endNodeIndex], and calls necessary methods for initial setup.

Documentation

reads native structure, stores it in allNodes[endNodeIndex], and calls necessary methods for initial setup. also initializes pairOfVector structure, which holds pairwise vector distances and angles.

if hhbonds is set, reads the hhbond information.

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