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extStr - xtern void reportTimes (struct tms start, struct tms end);
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Protein::createGivenConfig-
Protein::distanceSquaredBetweenCentroids - i (and j) is the i'th centroid, starting to count from the first centroid of the first non-loop vector.
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Protein::computeEnergy - computes the energy
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Protein::getEnergy - note: normally resize should also initialize, but I couldn't get it working, maybe since because this is a multidimensional vector
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Protein::getExclusionEnergy-
Protein::getNumLinks-
Protein::setNumLinks-
Protein::getMyNode - accessor
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Protein::probabilisticAcceptConformation - returns true if configuration does not collide with itself, and is low than a probabilistically generated energy threshold.
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Protein::createNonRandomConfig - creates a config.
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Protein::appendCNNFile
Alphabetic index
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