GENE NAME GWEIGHT Ross01_BJ_hTERT_PD210_Fibroblasts_UTSW Staunton01_CNS_SNB75 Chen02_SNU475_cells Ross00_OVCAR_4_CL6002_OVARIAN Ross01_HMS32 Ross00_HS_578T_CL5006_BREAST Ross01_Hs578T_ATCC Pomeroy02_Brain_Rhab_1 Nutt03_Brain_CG_3 Nutt03_Brain_CG_11 Nutt03_Brain_CG_14 Ross00_UO_31_CL9004_RENAL Shipp02_DLBC22 Boldrick02_U937_Dataset_BpTox6_timecourse_0_hr Boldrick02_U937_Dataset_Bp537_timecourse_0hr Boldrick02_U937_Dataset_BpA2_6_timecourse_0_0_hr Boldrick02_U937_Dataset_BpA2_6_timecourse_1_0_hr Perou00_HMEC_C Garber01_218_97_Adeno Whitfield02_10_hr_Hela_Double_Thymidine Whitfield02_12_hr_Hela_Double_Thymidine Whitfield02_2h_Thy_Noc_Exp4 Nutt03_Brain_CG_4 Detweiler01_E6_U937_wild_type_1h Golub99_ALL 522 TA- ML Norel Garber01_256_97_LCLC Detweiler01_E1_U937_mock_4h Detweiler01_E1_U937_mock_30m Detweiler01_E2_U937_wild_type_1ha Singh02_N46__normal Singh02_T39__tumor Singh02_N30__normal Singh02_N37__normal Singh02_N40__normal Singh02_N16__normal Singh02_N42__normal Singh02_N54__normal Singh02_N62__normal Singh02_N36__normal Singh02_N55__normal Singh02_N41__normal Ramaswamy01_Normal__Colon_CR_4 Ramaswamy01_Normal__Breast_BR_3 Ramaswamy01_Normal__Uterus_UT_4 Ramaswamy01_Tumor__Colorectal_Adeno_95_I_057 Ramaswamy01_Tumor__Pancreas_Adeno_Pan_29T Ramaswamy01_Normal__Bladder_BL_1 Ramaswamy01_Normal__Uterus_UT_3 Ramaswamy01_Normal__Prostate_PR_6 Ramaswamy01_Normal__Prostate_PR_7 Bhattacharjee01_SQ-SQ4t1-A358-6 Golub99_ALL 1275 TA ML Norel Singh02_N43__normal Chen02_FNH_SF16 Bhattacharjee01_AD-262t1a-A259-10 * Shipp02_DLBC25 Perou00_BC208B_AF Bhattacharjee01_AD-261t1b-A173-4 Pomeroy02_Brain_MGlio_6 Blader01_Normal_labelling_expt Singh02_N25__normal Armstrong01_MLL_18 Bhattacharjee01_AD-375t1-A115-3 * Bhattacharjee01_NL-2562-A413-7 Staunton01_OVAR_OVCAR4 Ross00_MOLT_4_CL7006_LEUKEMIA Ramaswamy01_Tumor__Lymphoma_Large_B-Cell_L_B_CELL_S94_17150_R Staunton01_LEUK_RPMI8266 Staunton01_LEUK_HL60 Staunton01_LEUK_SR Staunton01_LEUK_MOLT4 Ramaswamy01_Tumor__Renal_Carcinoma_Carc_614TS Ramaswamy01_Normal__Kidney_Norm_627NS Ramaswamy01_Tumor__Ovary_Adeno_0001c086 Bhattacharjee01_SMCL-SMCL8t1-A356-6 Bhattacharjee01_COID-4518-A305-5 Bhattacharjee01_COID-COID7t1-A344-6 Bhattacharjee01_COID-COID14t1-A351-6 Ramaswamy01_Tumor__CNS_Medulloblastoma_M20_A56 Bhattacharjee01_COID-COID4t1-A341-6 Ross01_MCF7_UCLA Ross00_RPMI_8226_CL7010_LEUKEMIA Ross00_MCF7A_repro Sorlie01_BC503B_BE Pomeroy02_Brain_MD_21 Pomeroy02_Brain_MD_31 Pomeroy02_Brain_MD_20 Pomeroy02_Brain_MD_50 Pomeroy02_Brain_MD_29 Pomeroy02_Brain_MD_26 Garber01_234_97_Adeno Singh02_N50__normal Staunton01_COLON_HCC-2998 Perou00_MCF7_NCI Perou00_T47D Garber01_315_99_SCLC Garber01_245_97_node Pomeroy02_Brain_PNET_2 Pomeroy02_Brain_PNET_3 Detweiler01_E2_U937_mock_4hb Pomeroy02_Brain_MGlio_10 Pomeroy02_Brain_PNET_4 Staunton01_NSCLC_H460 Staunton01_LEUK_K562 Detweiler01_E3_U937_mock_0_5h Detweiler01_E3_U937_mock_0_5hb Pomeroy02_Brain_MD_35 Pomeroy02_Brain_PNET_1 Pomeroy02_Brain_MD_10 Pomeroy02_Brain_MD_36 Pomeroy02_Brain_MD_11 Pomeroy02_Brain_MD_30 Pomeroy02_Brain_MD_16 Singh02_T21__tumor Singh02_T17__tumor Singh02_T49__tumor Singh02_N23__normal Singh02_N17__normal Singh02_N35__normal Singh02_N13__normal Singh02_N02__normal Singh02_N20__normal Singh02_N26__normal Singh02_N11__normal Nutt03_Brain_NO_2 Nutt03_Brain_NO_1 Nutt03_Brain_CO_1 Nutt03_Brain_CO_6 Nutt03_Brain_NO_5 Nutt03_Brain_NO_15 Nutt03_Brain_NG_2 Nutt03_Brain_NO_11 Nutt03_Brain_NO_9 Nutt03_Brain_NO_12 Singh02_N21__normal Singh02_T34__tumor Singh02_N05__normal Singh02_N03__normal Singh02_N19__normal Singh02_N06__normal Singh02_T24__tumor Singh02_N34__normal Singh02_N04__normal Singh02_T13__tumor Singh02_T11__tumor Singh02_T02__tumor Singh02_T18__tumor Singh02_T19__tumor Singh02_T15__tumor Singh02_T05__tumor Singh02_T26__tumor Singh02_T03__tumor Whitfield02_38_hr_Hela_Double_Thymidine_exp3 Detweiler01_E2_U937_wild_type_2h Detweiler01_E3_U937_wild_type_4hb Detweiler01_E3_U937_phoP_4hb Singh02_T20__tumor Alizadeh00_DLCL_0036_OCT_lc5b087 Singh02_T23__tumor Singh02_T37__tumor Alizadeh00_DLCL_0036_OCT Singh02_T53__tumor Singh02_T59__tumor 4627 MYH9 - 1 0.7 0.7 0.5 1.3 1.1 2.9 2.0 1.3 1.3 1.3 1.2 1.5 1.4 0.3 0.2 -0.02 -0.3 1.4 0.4 1.4 1.0 1.0 1.0 1.1 1.0 1.2 0.5 0.4 0.2 0.7 0.01 0.2 0.4 -0.09 0.4 0.0060 0.4 -0.2 0.7 0.3 0.5 1.2 1.7 1.5 1.4 1.0 1.3 1.9 0.2 1.1 -0.03 0.3 0.7 0.4 0.1 0.9 0.3 0.3 1.0 0.3 0.3 0.8 1.0 0.9 1.4 -0.4 -1.5 -2.0 -1.1 -1.5 -1.9 -0.8 -1.1 -2.1 -1.5 -0.7 -1.0 -1.2 -1.9 -1.0 -0.7 -0.8 -1.0 -0.5 -1.1 -1.4 -1.6 -1.9 -0.9 -3.4 -0.7 -0.3 -1.3 -1.6 -1.3 -1.1 -1.9 0.9 -0.3 -0.9 -0.5 2.4 -3.2 -3.3 -3.1 -2.9 -1.6 -0.8 -3.5 -2.5 -1.5 -2.5 -3.5 -0.7 -1.2 0.1 -1.0 -2.4 -1.5 -0.9 -1.3 -0.9 -0.8 -1.2 -0.8 -0.3 -0.3 0.0020 -2.1 -1.7 -1.4 -1.7 -1.1 -1.3 0.05 0.7 -1.5 -1.7 -0.3 0.2 -0.9 -1.3 -0.3 -0.2 0.1 -1.3 -0.8 -1.7 -1.1 -1.8 -1.6 0.2 -0.5 -0.2 -0.8 -0.8 -0.3 -0.4 -0.07 0.0060 -0.7 -0.8 0.1 1266 CNN3 - 1 1.3 1.5 0.5 1.7 1.2 1.3 1.8 1.9 0.4 0.8 0.4 1.7 1.4 -0.02 0.3 -0.09 -0.09 0.7 0.6 -0.4 -2.5 0.3 -0.08 0.1 0.2 0.5 0.7 1.4 0.5 0.2 0.1 -0.04 0.2 0.04 1.0 -0.5 0.1 2.0 2.1 1.8 1.1 0.7 2.4 2.5 2.1 2.4 -0.1 2.2 0.9 -0.8 0.4 1.3 1.2 1.3 1.4 0.2 0.3 -1.0 0.4 0.5 0.4 -3.6 -3.5 -3.6 -3.6 -3.6 -3.6 -1.0 -1.3 -3.5 0.4 -0.8 -1.8 -1.7 -0.7 -0.6 -2.5 -2.2 -3.1 -2.1 -1.1 -1.6 -2.3 -1.6 -2.3 -2.3 -0.6 -1.7 -3.6 -2.4 0.5 -0.1 -1.1 0.3 0.2 -0.3 -1.8 1.3 -3.6 -3.6 -1.4 -0.6 -1.6 -2.3 -1.7 -2.3 -1.5 -1.1 -1.7 -0.8 -0.3 -0.5 -0.1 -0.7 -0.9 -0.4 -0.3 -0.6 -0.4 -1.6 -1.0 -0.6 0.07 -0.3 -0.9 -1.2 -1.9 -1.3 -1.4 -1.5 -1.3 0.5 -0.1 -1.2 -1.7 0.5 -0.6 0.08 0.1 -0.6 -0.4 0.0020 0.1 -0.9 -0.1 -0.2 -1.1 0.3 0.1 0.2 5.0E-4 0.5 -0.9 -0.3 -0.2 -0.3 -1.6 81 ACTN4 - 1 1.1 1.2 1.1 -0.3 0.7 1.2 0.9 1.5 1.2 0.1 1.1 -0.02 1.4 0.9 0.7 0.5 1.3 0.9 0.5 0.6 1.1 0.9 -0.3 0.3 0.5 -0.6 -0.1 -0.3 -0.06 -0.2 0.1 -0.3 -0.3 0.1 0.1 1.0 -0.6 1.2 0.3 0.3 0.1 0.8 0.3 0.6 -1.1 -1.0 -0.6 -1.0 -0.4 -0.4 0.08 -0.8 -0.1 -1.2 1.1 1.1 -0.1 -0.9 -0.5 -1.3 -1.0 -2.5 -1.4 1.0 0.8 1.2 1.0 1.1 0.9 0.7 0.6 0.9 0.6 0.9 -0.6 -0.3 -0.2 -0.6 -0.9 -1.0 -1.6 -1.4 -1.5 -1.3 0.2 0.6 0.1 0.4 0.4 0.5 -0.6 -0.1 0.5 -0.08 -0.5 -0.1 0.01 0.06 0.4 -0.4 -0.5 -0.3 -0.4 0.02 -1.2 -1.1 -0.1 0.2 -0.9 -1.5 3.0E-4 7414 VCL - 1 0.8 1.1 0.4 2.0 0.9 1.3 1.6 1.7 1.0 1.3 1.0 0.8 1.2 1.5 1.1 1.3 1.0 1.2 0.6 0.9 0.6 1.1 0.5 1.0 0.4 1.1 0.4 0.4 0.4 1.4 1.2 0.6 1.3 1.2 0.8 0.7 0.5 0.4 0.4 0.1 0.2 1.7 1.8 2.1 0.4 1.0 2.9 3.0 1.4 1.5 -0.1 -0.2 2.5 0.7 -0.2 0.2 0.8 0.2 0.8 0.5 -0.9 0.06 0.8 1.1 1.2 -3.9 -2.4 -4.6 -3.0 -3.6 -4.7 -1.9 -1.4 -4.9 -0.7 -0.4 -0.5 0.2 -1.3 -0.4 -1.3 -2.4 -2.0 -1.1 -1.2 -2.2 -1.4 -2.3 -1.3 -1.0 0.3 -0.04 -1.6 -1.4 0.1 -1.2 -0.5 -0.6 -0.3 -1.3 -0.6 1.3 -1.5 0.08 -1.4 -1.2 -1.9 -1.9 -3.0 -3.0 -1.3 -1.4 -2.0 0.3 -0.7 -0.6 -0.1 0.1 0.0010 0.4 0.2 -0.3 0.3 0.5 -0.03 -0.5 0.01 -0.5 -0.4 -0.7 -0.3 -1.3 -0.8 -1.0 0.8 -0.3 -0.06 -0.4 -0.2 0.4 -0.8 -0.3 -0.5 -0.8 -1.1 -0.9 -0.9 -0.9 -0.4 -1.1 -1.4 -0.4 -0.1 -0.1 -0.9 -0.5 -1.2 -1.5 -0.2 -1.0 -1.2 -1.6 -1.5 1265 CNN2 - 1 2.0 1.2 2.6 1.2 1.6 0.7 1.1 1.4 0.7 1.1 0.8 0.8 1.0 2.3 1.1 0.2 0.5 0.7 -0.01 1.6 0.4 0.07 0.5 0.7 1.0 0.6 0.5 1.1 1.2 0.4 -0.09 -1.9 1.2 -0.08 0.5 -1.7 0.1 0.7 -3.9 -5.6 -5.6 -0.08 -5.6 -1.5 -1.1 -1.9 -1.9 -1.9 -1.9 -1.9 -1.9 0.3 -3.9 -1.6 0.7 -1.4 -1.4 0.9 -1.9 -0.3 -1.9 -1.9 -3.9 1.0 -1.0 -1.9 -0.1 -1.9 -0.8 -1.9 -1.9 -1.9 -1.9 -0.2 0.9 -0.6 -0.7 5358 PLS3 - 1 1.9 0.9 1.2 1.4 0.4 -0.04 -0.1 0.5 0.3 0.5 0.8 -0.1 0.3 0.2 0.08 0.3 -0.1 -0.1 -0.5 -0.1 0.2 2.1 0.3 0.1 -0.2 0.8 0.08 -0.7 -0.6 -1.9 -1.3 -1.6 -4.1 0.8 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.08 0.08 -0.1 -0.1 -0.1 -0.8 -0.8 -0.8 -0.6 -0.8 -0.8 -0.8 -0.8 -0.8 -0.8 -0.1 -0.1 -0.1 0.08 0.7 0.6 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.0020 -0.1 -0.1 -0.1 -0.1 -0.1 2314 FLII - 1 1.8 1.8 1.6 1.3 1.6 2.1 1.1 1.6 0.4 -0.1 -0.8 1.4 0.6 0.2 0.6 0.8 0.6 1.3 0.2 0.08 0.2 0.3 -0.3 -0.3 0.2 0.5 0.5 -0.1 0.07 0.8 -0.3 0.2 -0.1 -0.5 -0.3 -0.8 0.1 0.8 -0.1 1.0 1.0 1.2 0.01 0.3 -0.2 -1.8 -1.0 -1.4 -1.4 -0.8 -0.5 -0.4 -0.4 -1.1 -1.3 -0.3 -1.4 -0.7 -1.3 -1.2 -1.2 -1.0 -1.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -1.1 0.6 0.5 -1.1 -1.1 -1.1 -1.1 -1.1 -1.1 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.2 0.01 -0.4 -0.1 -0.3 -0.3 0.07 -0.3 -0.3 7171 TPM4 - 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1 0.7 -0.07 1.6 1.1 0.6 1.9 1.2 -0.1 0.2 1.0 1.6 -1.0 -0.3 -0.06 0.1 -0.1 0.1 0.2 0.3 0.1 -0.05 -0.1 0.1 0.09 -0.04 1.7 1.2 1.6 1.9 1.6 1.8 0.9 1.0 1.4 0.8 1.3 1.0 2.5 1.5 3.7 -1.0 -2.6 4.1 3.6 1.3 1.5 0.6 1.8 0.1 0.4 1.0 -0.3 0.06 0.5 -0.1 0.6 0.08 0.4 1.2 1.3 1.9 -0.5 -4.3 -0.07 -0.07 -0.07 -0.07 -4.3 -4.3 -4.3 0.4 1.1 -0.3 -0.1 -4.3 -1.8 -1.0 0.6 -1.2 -0.5 -0.1 -0.1 -0.1 -0.1 -0.1 3.1 -0.5 -0.01 -0.07 0.1 0.08 -0.2 0.3 -0.1 -0.1 -0.7 -0.1 -0.1 -0.07 -0.07 0.3 0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -2.5 -2.5 1.0 -0.8 -0.3 -0.06 0.0090 0.03 -0.06 0.6 -1.5 -0.8 0.1 -0.7 -0.2 -0.8 -0.8 -0.2 -0.8 -0.03 0.1 -0.2 -0.5 -0.09 -1.0 -2.5 -2.5 -1.3 -1.1 -1.3 -1.7 -2.0 -1.4 -0.8 -0.3 -0.7 -1.9 -1.1 -1.2 -0.01 -0.6 -0.3 -0.1 -1.6 -0.7 -1.0 -0.9 -2.3