This is an accompanying webpage to the paper

Activity motifs reveal principles of timing in transcription control of the yeast metabolic network

Methods

Impulse model description

• The Impulse model: A Technical report (PDF)
• A manuscript describing the impulse model and applications
  G. Chechik & D. Koller : Timing of gene expression responses to environmental changes, J. Comp. Biol. 2009. (PDF)

Impulse model computation

• Linux executable
• README (text)
• Example files

Network motif finding

• Browse the directory
• Download tarball
• README

For additional data and requests for code, please email me directly: at gal at ai dot stanford dot edu.