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Daphne Koller Publications
Research AreasPublication TypeYears (all)
BNBayesian Networks   BMBiology and Medicine
CGTComputational Game Theory   DMDecision Making
HMHybrid Models   LTWLanguage and Web
LGMLearning Graphical Models   PLLogic and Probabilistic Logic
MNMarkov Networks   RPMRicher Probabilistic Models
RPRobotics and Perception   SLSupervised Learning
TPMTemporal Probabilistic Models  
JJournal Article
CConference Paper
BBook
ChBook Chapter
TTechnical Report
PhDPhD Disseration
1985 - 1989
1990 - 1994
1995 - 1999
2000 - 2004
2005 - 2009
2010 - 2014

TypeReferenceDownload
topics: BNBMCGTDMHMLTWLGMPLMNRPMRPSLTPM

2004
J   E. Segal, N. Friedman, D. Koller, and A. Regev (2004). "A Module Map Showing Conditional Activity of Expression Modules in Cancer." Nature Genetics, 36(3), 1090-1098. bib/abs pdf
topics:    BM                                 

C   A.J. Battle, E. Segal, and D. Koller (2004). "Probabilistic Discovery of Overlapping Cell Processes and Their Regulation." Eight Annual International Conference on Research in Computational Molecular Biology (RECOMB). bib/abs pdf ps.gz
topics:    BM             LGM                  

J   R.M. Marion, A. Regev, E. Segal, Y. Barash, D. Koller, N. Friedman, and E. O'Shea (2004). "Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression." Proc. National Academcy of Sciences USA, 101, 14315-22. bib/abs pdf
topics:    BM                                 

J   S. Thrun, Y. Liu, D. Koller, A.Y. Ng, Z. Ghahramani, and H. Durrant-Whyte (2004). "Simultaneous localization and mapping with sparse extended information filters." International Journal of Robotics Research, 23(7/8). bib/abs pdf
topics:                               RP    TPM

J   S. Thrun, M. Montemerlo, D. Koller, B. Wegbreit, J. Nieto, and E. Nebot (2004). "Fastslam: An efficient solution to the simultaneous localization and mapping problem with unknown data association." Journal of Machine Learning Research. To appear. bib/abs pdf
topics:                               RP    TPM

J   L. Getoor, J. Rhee, D. Koller, and P. Small (2004). "Understanding Tuberculosis Epidemiology using Probabilistic Relational Models." Journal of Artificial Intelligence in Medicine, 30, 233-256. bib
topics:    BM                      RPM         

J   J. Y. Halpern and D. Koller (2004). "Representation dependence in probabilistic inference." Journal of Artificial Intelligence Research, 21, 319-356. Full version of IJCAI-95 paper. [older version, 1995]bib/abs pdf ps.gz
topics:                      PL               

C   D. Anguelov, H.-C. Pang, D. Koller, P. Srinivasan, and S. Thrun (2004). "Recovering Articulated Object Models from 3D Range Data." Proceedings of the Twentieth Conference on Uncertainty in AI (UAI) (pp. 18-26). bib/abs pdf
topics:                               RP      

C   D. Anguelov, D. Koller, E. Parker, and S. Thrun (2004). "Detecting and modeling doors with mobile robots." Proceedings of the IEEE International Conference on Robotics and Automation (ICRA). bib/abs pdf
topics:                               RP      

C   B. Taskar, V. Chatalbashev, and D. Koller (2004). "Learning Associative Markov Networks." Proceedings of the Twenty-First International Conference on Machine Learning (ICML). bib/abs pdf ps.gz
topics:                   LGM    MN            

C   B. Taskar, D. Klein, M. Collins, D. Koller, and C. Manning (2004). "Max-Margin Parsing." Proceedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP). Winner of the Best Paper Award. bib/abs pdf ps.gz
topics:                LTW LGM             SL   

C   E. Segal, R. Yelensky, A. Kaushal, T. Pham, A. Regev, D. Koller, and N. Friedman (2004). "GeneXPress: A Visualization and Statistical Analysis Tool for Gene Expression and Sequence Data." Proceedings of the 11th International Conference on Intelligent Systems for Molecular Biology (ISMB). bib/abs pdf ps.gz
topics:    BM                                 

C   B. Taskar, C. Guestrin, and D. Koller (2004). "Max-Margin Markov Networks." Advances in Neural Information Processing Systems (NIPS 2003). Winner of the Best Student Paper Award. bib/abs pdf ps.gz
topics:                LTW LGM    MN       SL   

C   B. Taskar, M.-F. Wong, P. Abbeel, and D. Koller (2004). "Link Prediction in Relational Data." Advances in Neural Information Processing Systems (NIPS 2003). bib/abs pdf ps.gz
topics:                LTW          RPM         

2003
J   J. Stuart, E. Segal, D. Koller, and S. Kim (2003). "A Gene Co-Expression Network for Global Discovery of Conserved Genetic Modules." Science, 302(5643), 249-55. bib/abs pdf
topics:    BM                                 

C   B. Blum, C.R. Shelton, and D. Koller (2003). "A Continuation Method for Nash Equilibria in Structured Games." Eighteenth International Joint Conference on Artificial Intelligence (IJCAI). [newer version, 2006]bib/abs pdf ps.gz
topics:       CGT                              

C   C. Guestrin, D. Koller, C. Gearhart, and N. Kanodia (2003). "Generalizing Plans to New Environments in Relational MDPs." Eighteenth International Joint Conference on Artificial Intelligence (IJCAI). bib/abs pdf ps.gz html
topics:          DM                           

C   M. Montemerlo, S. Thrun, D. Koller, and B. Wegbreit (2003). "FastSLAM 2.0: An Improved Particle Filtering Algorithm for Simultaneous Localization and Mapping that provably converges." Eighteenth International Joint Conference on Artificial Intelligence (IJCAI). bib/abs pdf
topics:                               RP    TPM

J   E. Segal, M. Shapira, A. Regev, D. Pe'er, D. Botstein, D. Koller, and N. Friedman (2003). "Module Networks: Identifying Regulatory Modules and Their Condition-Specific Regulators from Gene Expression Data." Nature Genetics, 34(2), 166-176. bib/abs pdf
topics:    BM                                 

C   E. Segal, A.J. Battle, and D. Koller (2003). "Decomposing gene expression into cellular processes." Proc. Pacific Symposium on Biocomputing (PSB) (pp. 89-100). bib/abs pdf ps.gz
topics:    BM                      RPM         

J   D. Koller and B. Milch (2003). "Multi-Agent Influence Diagrams for Representing and Solving Games." Games and Economic Behavior, 45(1), 181-221. Full version of paper in IJCAI '03. [older version, 2001]bib/abs pdf ps.gz
topics:       CGT                              

J   N. Friedman and D. Koller (2003). "Being Bayesian about Bayesian Network Structure:A Bayesian Approach to Structure Discovery in Bayesian Networks.." Machine Learning, 50(1--2), 95-125. Full version of UAI 2000 paper. [older version, 2000]bib/abs pdf ps.gz
topics: BN                LGM                  

J   C.E. Guestrin, D. Koller, R. Parr, and S. Venkataraman (2003). "Efficient Solution Algorithms for Factored MDPs." Journal of Artificial Intelligence Research, 19, 399-468. IJCAI/JAIR Best Paper Award, 2007. bib/abs pdf
topics:          DM                           

C   E. Segal, D. Pe'er, A. Regev, D. Koller, and N. Friedman (2003). "Learning Module Networks." Proc. Nineteenth Conference on Uncertainty in Artificial Intelligence (UAI) (pp. 525-534). [newer version, 2005]bib/abs pdf
topics:    BM             LGM       RPM         

C   U. Nodelman, C.R. Shelton, and D. Koller (2003). "Learning Continuous Time Bayesian Networks." Proc. Nineteenth Conference on Uncertainty in Artificial Intelligence (UAI) (pp. 451-458). Winner of the Best Paper Award. bib/abs pdf ps.gz
topics:                   LGM                TPM

J   E. Segal, R. Yelensky, and D. Koller (2003). "Genome-wide Discovery of Transcriptional Modules from DNA Sequence and Gene Expression." Bioinformatics, 19(S1 (Proc. ISMB)), 1273-82. Winner of the ISMB Best Paper Award. bib/abs pdf ps.gz
topics:    BM                      RPM         

J   E. Segal, H. Wang, and D. Koller (2003). "Discovering Molecular Pathways from Protein Interaction and Gene Expression data." Bioinformatics, 19(S1 (Proc ISMB)). Winner of the ISMB Best Student Paper Award. bib/abs pdf ps.gz
topics:    BM                      RPM         

C   B. Taskar, M.-F. Wong, and D. Koller (2003). "Learning on the Test Data: Leveraging `Unseen' Features." Proc. Twentieth International Conference on Machine Learning (ICML). bib/abs pdf ps.gz
topics:                LTW LGM             SL   

2002
J   L. Getoor, N. Friedman, D. Koller, and B. Taskar (2002). "Learning probabilistic models of Relational Structure." Journal of Machine Learning Research, 3, 679-707. [older version, 2001]bib pdf
topics:                LTW LGM       RPM         

C   E. Segal, D. Koller, and D. Ormoneit (2002). "Probabilistic Abstraction Hierarchies." Advances in Neural Information Processing Systems (NIPS 2001) (pp. 913-920). bib/abs pdf ps.gz
topics:                   LGM                  

C   U. Lerner, B. Moses, M. Scott, S. McIlraith, and D. Koller (2002). "Monitoring a complex physical system using a hybrid dynamic Bayes net." Proc. Eighteenth Conference on Uncertainty in Artificial Intelligence (UAI) (pp. 301-310). bib/abs pdf ps.gz
topics:             HM                      TPM

C   M. Montemerlo, S. Thrun, D. Koller, and B. Wegbreit (2002). "FastSLAM: A Factored Solution to the Simultaneous Localization and Mapping Problem." Proceedings of the 18th National Conference on Artificial Intelligence (AAAI) (pp. 593-598). bib/abs pdf
topics:                               RP    TPM

C   E. Segal, Y. Barash, I. Simon, N. Friedman, and D. Koller (2002). "From Promoter Sequence to Expression: A Probabilistic Framework." Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB) (pp. 263-272). bib
topics:    BM                      RPM         

C   E. Segal and D. Koller (2002). "Probabilistic Hierarchical Clustering for Biological Data." Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB) (pp. 273-280). bib
topics:                                       

C   D. Anguelov, R. Biswas, D. Koller, B. Limketkai, S. Sanner, and S. Thrun (2002). "Learning hierarchical object maps of non-stationary environments with mobile robots." Proceedings of the 17th Annual Conference on Uncertainty in AI (UAI). bib/abs pdf
topics:                               RP      

C   U. Nodelman, C.R. Shelton, and D. Koller (2002). "Continuous Time Bayesian Networks." Proceedings of the Eighteenth Conference on Uncertainty in Artificial Intelligence (UAI) (pp. 378-387). bib/abs pdf ps.gz
topics:                                     TPM

C   B. Taskar, P. Abbeel, and D. Koller (2002). "Discriminative Probabilistic Models for Relational Data." Proc. Eighteenth Conference on Uncertainty in Artificial Intelligence (UAI). bib/abs pdf ps.gz
topics:                LTW LGM       RPM    SL   

C   D. Vickrey and D. Koller (2002). "Multi-Agent Algorithms for Solving Graphical Games." Proceedings of the Eighteenth National Conference on Artificial Intelligence (AAAI-02) (pp. 345-351). bib/abs pdf ps.gz
topics:       CGT                              

C   C.E. Guestrin, D. Koller, and R. Parr (2002). "Multiagent Planning with Factored MDPs." Advances in Neural Information Processing Systems (NIPS 2001) (pp. 1523-1530). bib/abs pdf
topics:          DM                           

2001
J   S. Tong and D. Koller (2001). "Support vector machine active learning with applications to text classification." Journal of Machine Learning Research, 2, 45-66. Full version of paper in ICML 2000. [older version, 2000]bib/abs pdf.gz ps.gz
topics:                LTW                SL   

C   C. Guestrin, D. Koller, and R. Parr (2001). "Max-norm Projections for Factored MDPs." Seventeenth International Joint Conference on Artificial Intelligence (IJCAI) (pp. 673-680). bib/abs pdf ps.gz
topics:          DM                           

C   S. Tong and D. Koller (2001). "Active Learning for Structure in Bayesian Networks." Seventeenth International Joint Conference on Artificial Intelligence (IJCAI) (pp. 863-869). bib/abs pdf ps.gz
topics:                   LGM                  

C   U. Chajewska, D. Koller, and D. Ormoneit (2001). "Learning an Agent's Utility Function by Observing Behavior." Proceedings of the Eighteenth International Conference on Machine Learning (ICML). bib/abs pdf ps.gz
topics:          DM                           

J   E. Segal, B. Taskar, A. Gasch, N. Friedman, and D. Koller (2001). "Rich probabilistic models for gene expression." Bioinformatics, 17(Suppl 1), S243-52. Proc. ISMB 2001. bib/abs pdf ps.gz
topics:    BM                      RPM         

C   L. Getoor, N. Friedman, D. Koller, and B. Taskar (2001). "Learning probabilistic models of Relational Structure." Proceedings of the Eighteenth International Conference on Machine Learning (pp. 170-177). [newer version, 2002]bib/abs pdf ps.gz
topics:                LTW LGM       RPM         

C   L. Getoor, B. Taskar, and D. Koller (2001). "Using Probabilistic Models for Selectivity Estimation." Proceedings of ACM SIGMOD International Conference on Management of Data (pp. 461-472). bib/abs pdf ps.gz
topics:                   LGM       RPM         

C   D. Koller and B. Milch (2001). "Multi-Agent Influence Diagrams for Representing and Solving Games." Proc. 17th International Joint Conference on Artificial Intelligence (IJCAI) (pp. 1027-1034). [newer version, 2003]bib/abs pdf ps.gz
topics:       CGT DM                           

C   U. Lerner, E. Segal, and D. Koller (2001). "Exact Inference in Networks with Discrete Children of Continuous Parents." Seventeenth Annual Conference on Uncertainty in Artificial Intelligence (UAI). bib/abs pdf ps.gz
topics: BN          HM                        

C   B. Taskar, E. Segal, and D. Koller (2001). "Probabilistic Supervised Learning and Clustering in Relational Data." Proceedings of the Seventeenth International Joint Conference on Artificial Intelligence (IJCAI) (pp. 870-876). bib/abs pdf ps.gz
topics:                LTW LGM       RPM    SL   

C   S. Tong and D. Koller (2001). "Active Learning for Parameter Estimation in Bayesian Networks." Conference on Advances in Neural Infomation Processing Systems (NIPS 2000). bib/abs pdf ps.gz
topics:                   LGM                  

B   J. Breese and D. Koller (2001). Proceedings of the Seventeenth Conference on Uncertainty in Artificial Intelligence (UAI '01). Morgan Kaufmann.bib
topics:                                       

Ch   L. Getoor, N. Friedman, D. Koller, and A. Pfeffer (2001). "Learning Probabilistic Relational Models." In S. D\vzeroski and N. Lavrac, editors, Relational Data Mining (pp. 307-335). bib pdf ps.gz
topics:                   LGM       RPM         

Ch   D. Koller and U. Lerner (2001). "Sampling in Factored Dynamic Systems." In A. Doucet, J.F.G. de Freitas, and N. Gordon, editors, Sequential Monte Carlo Methods in Practice. [older version, 2000]bib
topics:                                     TPM

2000
J   N. Friedman, J.Y. Halpern, and D. Koller (2000). "First-order conditional logic for default reasoning revisited." ACM Transactions on Computational Logic, 2(1), 175-207. Full version of AAAI '96 paper. [older version, 1996]bib/abs pdf
topics:                      PL               

C   A. Pfeffer and D. Koller (2000). "Semantics and inference for recursive probability models." Proceedings of the 17th National Conference on Artificial Intelligence (AAAI) (pp. 538-544). bib/abs pdf ps.gz
topics:                            RPM         

C   S. Tong and D. Koller (2000). "Restricted Bayes optimal classifiers." Proceedings of the 17th National Conference on Artificial Intelligence (AAAI) (pp. 658-664). bib/abs pdf ps.gz full.pdf
topics:                                  SL   

C   S. Tong and D. Koller (2000). "Support vector machine active learning with applications to text classification." Proceedings of the 17th International Conference on Machine Learning (ICML) (pp. 999-1006). [newer version, 2001]bib/abs pdf ps.gz
topics:                LTW                SL   

C   G. Elidan, N. Lotner, N. Friedman, and D. Koller (2000). "Discovering hidden variables: A structure-based approach." Advances in Neural Information Processing Systems (NIPS 2000). bib/abs pdf ps.gz
topics: BN                LGM                  

C   U. Chajewska, D. Koller, and R. Parr (2000). "Making Rational Decisions using Adaptive Utility Elicitation." Proceedings of the 17th National Conference on Artificial Intelligence (AAAI) (pp. 363-369). bib/abs pdf ps.gz
topics:          DM                           

C   U. Chajewska and D. Koller (2000). "Utilities as Random Variables: Density Estimation and Structure Discovery." Proc. UAI--00 (pp. 63-71). bib/abs pdf ps.gz
topics:          DM       LGM                  

C   N. Friedman and D. Koller (2000). "Being Bayesian about Bayesian Network Structure:A Bayesian Approach to Structure Discovery in Bayesian Networks.." Proceedings of the 16th Annual Conference on Uncertainty in AI (UAI) (pp. 201-210). [newer version, 2003]bib/abs pdf ps.gz
topics: BN                LGM                  

C   D. Koller and R. Parr (2000). "Policy Iteration for Factored MDPs." Proceedings of the 16th Annual Conference on Uncertainty in AI (UAI) (pp. 326-334). bib/abs pdf ps.gz
topics:          DM                           

C   U. Lerner, R. Parr, D. Koller, and G. Biswas (2000). "Bayesian Fault Detection and Diagnosis in Dynamic Systems." Proceedings of the 17th National Conference on Artificial Intelligence (AAAI) (pp. 531-537). bib/abs pdf ps.gz
topics:             HM                      TPM

C   B. Milch and D. Koller (2000). "Probabilistic Models for Agents' Beliefs and Decisions." Proceedings of the 16th Annual Conference on Uncertainty in AI (UAI) (pp. 389-396). bib/abs pdf ps.gz
topics:          DM                           

Ch   D. Koller and U. Lerner (2000). "Sampling in Factored Dynamic Systems." In A. Doucet, J.F.G. de Freitas, and N. Gordon, editors, Sequential Monte Carlo Methods In Practice. Invited contribution. [newer version, 2001]bib pdf ps.gz
topics:                                     TPM

C   A. Rodríguez, R. Parr, and D. Koller (2000). "Reinforcement Learning Using Approximate Belief States." Advances in Neural Information Processing Systems (NIPS '99) (pp. 1036-1042). bib/abs pdf ps.gz
topics:          DM                           

C   A.Y. Ng, R. Parr, and D. Koller (2000). "Policy Search via Density Estimation." Advances in Neural Information Processing Systems (NIPS '99). bib/abs pdf ps.gz
topics:          DM                           

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