BioProspector Search
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Submit another job only if one of the following is true:
1. You have received answer from your previous submission.
2. Your previous job was submitted more than one day ago.
User information
Please specify your email so we can send the search result to you
Run information
Please specify a run name (will be included in the result email)
Input Sequences
You can either specify a file
Or paste your sequences below:
Motif Model
Motif is a
one-block
two-block
two-block palindrome
motif
Width of the first motif block
5
6
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Width of the second motif block (no need for one block or palindrome motifs)
0
5
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20
For two-block or two-block palindrome motifs:
Minimum gap between the blocks:
0
1
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40
Maximum gap between the blocks (no more than 15 above min gap):
0
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Motif occurs in
not all
each
input sequences
Motif occurs on
forward strand
both strands
of input sequences
Background Model
You can use the input sequence as background if you don't specify any of the following.
Or you can specify a background sequence file
Or paste background sequences below:
Or use the precomputed genome background model
V. cholerae intergenic
E. coli genome
E. coli intergenic
C. elegans intergenic
Human 1000bp upstream
Human 5000bgp upstream
Mouse 1000 bp upstream
Mouse 5000bp upstream
N. crassa 1000bp upstream
B. subtilis intergenic
M. tuberculosis genome
M. xanthus genome
S. cerevisiae genome
S. cerevisiae intergenic
Result Display
Report top
1
2
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9
10
motifs found.