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Browse by gene sets Each module was originated from a combination of several gene sets, where the gene sets include: clusters of coherently expressed genes from a variety of studies ('Clusters'), genes expressed in specific tissue types ('Tissue'), and genes belonging to the same functional category ('GO') or pathway ('GenMapp' or 'KEGG'). For each gene set, you can see below all the modules that originated from it, as well as the source of the gene set. Gene set Source Modules 26S proteasome GO 28 91 3'\,5'-cyclic-nucleotide phosphodiesterase activity Tissue 560 A2058_1 Tissue 18 52 118 A2058_2 Tissue 18 52 118 acetylcholine receptor activity GO 216 267 328 415 acid-D-amino acid ligase activity GO 233 278 actin binding GO 419 524 actin filament-based movement GO 330 387 512 actin filament-based process GO 330 387 512 acyl-CoA dehydrogenase activity GO 184 221 adenylate cyclase activation GO 454 575 Adrenal_gland_1 Tissue 19 Adrenal_gland_2 Tissue 19 alcohol dehydrogenase activity GO 514 alcohol dehydrogenase activity\, zinc-dependent Tissue 514 aldehyde dehydrogenase activity GO 464 aldehyde metabolism GO 519 Alizadeh00 11 Clusters 238 301 361 436 Alizadeh00 13 Clusters 237 301 361 436 Alizadeh00 16 Clusters 97 182 261 358 525 Alizadeh00 18 Clusters 145 188 238 301 361 436 Alizadeh00 19 Clusters 169 Alizadeh00 20 Clusters 54 Alizadeh00 21 Clusters 495 Alizadeh00 23 Clusters 255 317 378 459 532 Alizadeh00 25 Clusters 79 128 170 Alizadeh00 27 Clusters 301 361 436 Alizadeh00 29 Clusters 128 170 Alizadeh00 30 Clusters 317 378 459 532 Alizadeh00 31 Clusters 429 484 Alizadeh00 33 Clusters 69 136 179 255 317 378 459 532 Alizadeh00 34 Clusters 378 459 532 Alizadeh00 36 Clusters 208 292 345 436 Alizadeh00 3 Clusters 136 179 255 317 378 459 532 Alizadeh00 40 Clusters 37 69 136 179 255 317 378 459 532 Alizadeh00 42 Clusters 61 126 Alizadeh00 43 Clusters 261 358 525 Alizadeh00 44 Clusters 534 Alizadeh00 45 Clusters 430 484 Alizadeh00 46 Clusters 456 Alizadeh00 48 Clusters 436 Alizadeh00 4 Clusters 179 255 317 378 459 532 Alizadeh00 5 Clusters 292 345 436 Alizadeh00 6 Clusters 277 358 525 Alizadeh00 8 Clusters 361 436 Alizadeh00 9 Clusters 182 261 358 525 alpha-type channel activity GO 316 415 amine metabolism GO 78 amine oxidase activity GO 557 amine receptor activity GO 383 441 amino acid activation GO 110 160 amino acid and derivative metabolism GO 78 amino acid biosynthesis GO 354 amino acid metabolism GO 235 Aminoacyl-tRNA_biosynthesis KEGG 133 160 Amygdala_1 Tissue 11 66 100 137 Amygdala_2 Tissue 11 66 100 137 Androgen_and_estrogen_metabolism KEGG 505 angiogenesis GO 178 362 444 516 anion transport GO 141 396 489 anti-apoptosis GO 537 antibacterial peptide activity GO 423 478 anticoagulant activity GO 328 415 antifungal peptide activity GO 423 478 antigen binding GO 522 antigen presentation\, endogenous antigen Tissue 144 293 345 436 antigen presentation\, peptide antigen Tissue 143 293 345 436 antigen processing\, endogenous antigen via MHC class I Tissue 144 293 345 436 antigen processing\, exogenous antigen via MHC class II Tissue 543 antigen processing GO 143 293 345 436 antimicrobial peptide activity GO 247 apoptosis inhibitor activity GO 537 apoptotic program GO 528 Apotosis KEGG 340 Armstrong01 11 Clusters 104 181 242 379 Armstrong01 12 Clusters 13 41 104 181 242 379 Armstrong01 13 Clusters 94 Armstrong01 21 Clusters 104 181 242 379 Armstrong01 22 Clusters 99 129 Armstrong01 25 Clusters 545 Armstrong01 26 Clusters 181 242 379 Armstrong01 27 Clusters 83 114 151 Armstrong01 29 Clusters 441 Armstrong01 31 Clusters 54 Armstrong01 32 Clusters 83 114 151 Armstrong01 34 Clusters 204 Armstrong01 37 Clusters 99 129 Armstrong01 38 Clusters 204 Armstrong01 39 Clusters 59 Armstrong01 40 Clusters 204 Armstrong01 42 Clusters 129 Armstrong01 44 Clusters 204 Armstrong01 47 Clusters 533 Armstrong01 48 Clusters 104 181 242 379 Armstrong01 4 Clusters 41 104 181 242 379 Armstrong01 5 Clusters 99 129 Armstrong01 6 Clusters 99 129 aromatic amino acid family metabolism GO 140 ATPase activity\, coupled Tissue 229 318 403 451 ATP binding GO 244 ATP synthesis coupled electron transport (sensu Eukarya) GO 25 77 152 ATP_Synthesis KEGG 116 152 Benzoate_degradation KEGG 303 403 451 Bhattacharjee01 11 Clusters 181 242 379 Bhattacharjee01 15 Clusters 448 Bhattacharjee01 16 Clusters 99 129 Bhattacharjee01 18 Clusters 181 242 379 Bhattacharjee01 19 Clusters 94 Bhattacharjee01 20 Clusters 83 114 151 Bhattacharjee01 22 Clusters 47 Bhattacharjee01 23 Clusters 104 181 242 379 Bhattacharjee01 24 Clusters 99 129 Bhattacharjee01 25 Clusters 104 181 242 379 Bhattacharjee01 38 Clusters 489 Bhattacharjee01 6 Clusters 99 129 Bhattacharjee01 7 Clusters 84 biogenic amine metabolism GO 440 Blader01 12 Clusters 323 Blader01 24 Clusters 495 Blader01 28 Clusters 495 Blader01 36 Clusters 495 Blader01 37 Clusters 495 Blader01 38 Clusters 495 Blader01 40 Clusters 458 Blader01 50 Clusters 151 blood coagulation GO 131 blood group antigen GO 539 Boldrick02 10 Clusters 119 171 208 292 345 436 Boldrick02 11 Clusters 358 525 Boldrick02 12 Clusters 126 Boldrick02 15 Clusters 37 69 136 179 255 317 378 459 532 Boldrick02 16 Clusters 126 Boldrick02 17 Clusters 179 255 317 378 459 532 Boldrick02 18 Clusters 171 208 292 345 436 Boldrick02 19 Clusters 481 544 Boldrick02 20 Clusters 69 136 179 255 317 378 459 532 Boldrick02 22 Clusters 308 Boldrick02 26 Clusters 481 544 Boldrick02 27 Clusters 136 179 255 317 378 459 532 Boldrick02 28 Clusters 126 Boldrick02 30 Clusters 522 Boldrick02 32 Clusters 308 Boldrick02 34 Clusters 229 318 403 451 Boldrick02 35 Clusters 532 Boldrick02 36 Clusters 119 171 208 292 345 436 Boldrick02 40 Clusters 465 560 Boldrick02 46 Clusters 317 378 459 532 Boldrick02 49 Clusters 261 358 525 Boldrick02 4 Clusters 171 208 292 345 436 Boldrick02 5 Clusters 372 441 Boldrick02 8 Clusters 255 317 378 459 532 Boldrick02 9 Clusters 119 171 208 292 345 436 bone remodeling GO 234 brain development GO 372 441 Burkitts_Daudi_1 Tissue 53 118 Burkitts_Daudi_2 Tissue 53 118 Burkitts_Raji_1 Tissue 53 118 Burkitts_Raji_2 Tissue 53 118 calcium-dependent phospholipid binding GO 390 543 calcium ion binding GO 324 calcium ion homeostasis GO 262 carbohydrate binding GO 96 410 carbohydrate metabolism GO 212 carbohydrate transporter activity GO 311 573 carbon-carbon lyase activity GO 272 377 Carbon_fixation KEGG 377 carbon-oxygen lyase activity GO 295 343 carboxylic acid biosynthesis GO 327 462 carboxylic acid catabolism GO 417 carboxylic acid metabolism GO 40 carboxylic acid transporter activity GO 71 186 341 411 511 carboxylic acid transport GO 71 186 341 411 511 carboxylic ester hydrolase activity GO 401 carboxypeptidase A activity GO 231 402 492 568 carboxypeptidase activity GO 402 492 568 catabolism GO 172 209 catalytic activity GO 212 cation homeostasis GO 191 262 cation transporter activity GO 307 cation transport GO 498 Caudate_nucleus_1 Tissue 11 66 100 137 Caudate_nucleus_2 Tissue 11 66 100 137 cbb3-type cytochrome c oxidase GO 103 152 cell adhesion GO 122 cell adhesion molecule activity GO 122 cell adhesion receptor activity GO 275 412 cell-cell signaling GO 92 cell cycle checkpoint GO 372 441 Cell cycle GenMapp 57 Cell_cycle KEGG 57 cell death GO 399 cell ion homeostasis GO 191 262 cell-matrix adhesion GO 412 cell migration GO 411 511 cellular morphogenesis GO 524 central nervous system development GO 497 Cerebellum_1 Tissue 11 66 100 137 Cerebellum_2 Tissue 11 66 100 137 cGMP biosynthesis GO 445 516 channel/pore class transporter activity GO 63 chaperone activity GO 299 355 chemokine receptor binding GO 263 chemosensory perception GO 123 197 252 chemotaxis GO 108 263 Chen02 11 Clusters 458 Chen02 13 Clusters 205 Chen02 14 Clusters 67 Chen02 19 Clusters 239 Chen02 1 Clusters 257 Chen02 27 Clusters 451 Chen02 2 Clusters 493 Chen02 33 Clusters 49 95 163 Chen02 47 Clusters 212 Chen02 50 Clusters 84 Chen02 6 Clusters 239 Chen02 8 Clusters 48 95 163 chloride transport GO 396 489 Cholesterol Biosynthesis GenMapp 432 cholesterol biosynthesis GO 432 cholesterol metabolism GO 236 chromatin assembly/disassembly GO 189 552 chromatin GO 552 chromatin remodeling complex GO 450 538 chromosome GO 168 222 421 534 chromosome organization and biogenesis (sensu Eukarya) GO 392 457 chymotrypsin activity GO 109 Citrate_cycle_TCA_cycle KEGG 306 clathrin vesicle coat GO 264 395 509 coated vesicle GO 39 264 395 509 collagen binding GO 513 collagen catabolism GO 211 562 complement activation\, classical pathway Tissue 58 130 Complement Activation, Classical Pathway GenMapp 130 complement activation GO 58 130 complement activity GO 130 compound eye morphogenesis (sensu Drosophila) GO 80 200 259 condensed chromosome GO 222 421 534 condensed nuclear chromosome kinetochore GO 421 534 conjugation with cellular fusion GO 573 conjugation without cellular fusion GO 289 375 Corpus_callosum_1 Tissue 11 66 100 137 Corpus_callosum_2 Tissue 11 66 100 137 Corpus_callosum_3 Tissue 11 66 100 137 Cortex Tissue 11 66 100 137 Cuadras02 22 Clusters 350 Cuadras02 33 Clusters 363 Cuadras02 35 Clusters 95 163 Cuadras02 48 Clusters 372 441 Cuadras02 9 Clusters 243 cyclic nucleotide biosynthesis GO 65 445 516 cyclic nucleotide metabolism GO 65 445 516 cysteine metabolism GO 428 471 528 Cysteine_metabolism KEGG 530 cytochrome c oxidase activity GO 103 152 cytochrome P450 activity GO 106 135 cytokine activity GO 433 cytolysis GO 575 Cytoplasmic Ribosomal Proteins GenMapp 83 114 151 Cytoplasmic tRNA Synthetases GenMapp 133 160 cytoskeletal protein binding GO 419 524 cytoskeleton-dependent intracellular transport GO 196 253 cytosolic calcium ion concentration elevation GO 288 375 cytosolic large ribosomal subunit (sensu Eukarya) GO 83 114 151 cytosolic small ribosomal subunit (sensu Eukarya) GO 29 83 114 151 damaged DNA binding GO 392 457 defense response GO 223 Detweiler01 13 Clusters 95 163 Detweiler01 19 Clusters 372 441 Detweiler01 20 Clusters 257 Detweiler01 23 Clusters 9 48 95 163 Detweiler01 24 Clusters 383 441 Detweiler01 27 Clusters 342 Detweiler01 29 Clusters 239 Detweiler01 36 Clusters 397 Detweiler01 41 Clusters 205 Detweiler01 49 Clusters 486 Detweiler01 8 Clusters 114 151 development GO 220 DNA binding GO 198 252 DNA dependent ATPase activity GO 318 403 451 DNA dependent DNA replication GO 125 158 DNA packaging GO 127 189 552 DNA replication and chromosome cycle GO 125 158 DNA replication GO 125 158 DOHH2_1 Tissue 53 118 DOHH2_2 Tissue 53 118 DRG_1 Tissue 2 DRG_2 Tissue 2 ectoderm development GO 153 297 357 eicosanoid biosynthesis GO 148 326 462 eicosanoid metabolism GO 148 326 462 Eicosanoid Synthesis GenMapp 431 Electron Transport Chain GenMapp 62 152 electron transporter activity GO 93 electron transport GO 43 embryonic development GO 14 178 362 444 516 embryonic pattern specification GO 14 178 362 444 516 endomembrane system GO 98 198 252 endonuclease activity GO 360 439 endopeptidase activity GO 209 endopeptidase inhibitor activity GO 164 endoribonuclease activity GO 467 energy derivation by oxidation of organic compounds GO 306 energy pathways GO 43 energy taxis GO 108 263 enzyme inhibitor activity GO 164 ephrin receptor activity GO 493 epidermal differentiation GO 153 297 357 establishment and/or maintenance of chromatin architecture GO 127 189 552 eukaryotic 43S pre-initiation complex GO 149 eukaryotic translation initiation factor 3 complex GO 447 excitatory extracellular ligand-gated ion channel activity GO 267 328 415 excretion GO 416 extracellular ligand-gated ion channel activity GO 214 extracellular matrix structural constituent GO 122 eye photoreceptor cell fate commitment GO 80 200 259 fatty acid beta-oxidation GO 185 221 fatty acid biosynthesis GO 326 462 Fatty Acid Degradation GenMapp 184 221 fatty acid oxidation GO 185 221 Fc receptor activity GO 424 478 Fetal_brain_1 Tissue 11 66 100 137 Fetal_brain_2 Tissue 11 66 100 137 Fetal_liver_1 Tissue 24 55 88 Fetal_liver_2 Tissue 24 55 88 fibrillar collagen GO 513 GA10_1 Tissue 53 118 GA10_2 Tissue 53 118 GABA-A receptor activity GO 215 galactose binding GO 391 543 gap-junction forming channel activity GO 482 544 gap junction GO 482 544 Garber01 10 Clusters 49 95 163 Garber01 19 Clusters 67 Garber01 20 Clusters 486 Garber01 23 Clusters 54 Garber01 28 Clusters 441 Garber01 30 Clusters 534 Garber01 31 Clusters 47 Garber01 35 Clusters 312 439 Garber01 43 Clusters 83 114 151 Garber01 45 Clusters 84 Garber01 48 Clusters 372 441 Garber01 49 Clusters 95 163 Garber01 4 Clusters 154 297 357 Garber01 50 Clusters 205 glutathione conjugation reaction GO 101 132 310 Glutathione_metabolism KEGG 310 glutathione peroxidase activity GO 530 glutathione transferase activity GO 101 132 310 Glycerolipid_metabolism KEGG 557 Glycolysis and Gluconeogenesis GenMapp 377 glycolysis GO 306 glycosaminoglycan binding GO 385 glycosaminoglycan metabolism GO 509 Golub99 11 Clusters 20 111 157 242 379 Golub99 12 Clusters 120 175 241 291 Golub99 15 Clusters 105 Golub99 17 Clusters 83 114 151 Golub99 18 Clusters 111 157 242 379 Golub99 19 Clusters 120 175 241 291 Golub99 1 Clusters 120 175 241 291 Golub99 23 Clusters 112 176 Golub99 24 Clusters 175 241 291 Golub99 30 Clusters 175 241 291 Golub99 31 Clusters 111 157 242 379 Golub99 32 Clusters 33 Golub99 41 Clusters 120 175 241 291 Golub99 42 Clusters 120 175 241 291 Golub99 43 Clusters 120 175 241 291 Golub99 44 Clusters 157 242 379 Golub99 45 Clusters 204 Golub99 46 Clusters 400 Golub99 48 Clusters 111 157 242 379 Golub99 49 Clusters 113 176 Golub99 7 Clusters 151 Golub99 8 Clusters 501 GPCRs, Class A Rhodopsin-like 2 GenMapp 571 GPCRs, Class B Secretin-like GenMapp 470 557 GPCRs, Class C Metabotropic glutamate, pheromone GenMapp 493 GPI-anchored membrane-bound receptor GO 328 415 G-protein chemoattractant receptor activity GO 288 375 G-protein coupled receptor activity GO 146 G-protein coupled receptor protein signaling pathway GO 289 375 G-protein signaling\, adenylate cyclase activating pathway Tissue 454 575 G-protein signaling\, coupled to IP3 second messenger (phospholipase C activating) Tissue 367 growth factor activity GO 433 growth factor binding GO 190 474 GTPase activity GO 86 GTP binding GO 87 guanylate cyclase activity GO 445 516 Heart_1 Tissue 60 88 Heart_2 Tissue 60 88 heat shock protein activity GO 355 hematopoietin/interferon-class (D200-domain) cytokine receptor activity GO 265 Heme Biosynthesis GenMapp 227 539 heme biosynthesis GO 335 505 hemostasis GO 131 Hep3b_1 Tissue 8 52 118 Hep3b_2 Tissue 8 52 118 heparin binding GO 385 heterocycle metabolism GO 376 450 538 heterophilic cell adhesion GO 410 hexosaminidase activity GO 408 491 568 Histidine_metabolism KEGG 373 histogenesis GO 153 297 357 HL60_1 Tissue 16 53 118 HL60_2 Tissue 16 53 118 hormone activity GO 382 hormone metabolism GO 445 516 host-pathogen interaction GO 254 312 439 humoral immune response GO 75 HUVEC_1 Tissue 52 118 HUVEC_2 Tissue 3 52 118 HUVEC_3 Tissue 3 52 118 hydrogen-exporting ATPase activity\, phosphorylative mechanism Tissue 402 492 568 hydrogen ion transporter activity GO 62 152 hydrolase activity GO 151 hydrolase activity\, hydrolyzing O-glycosyl compounds Tissue 492 568 hydro-lyase activity GO 295 343 immune response GO 46 75 immunoglobulin receptor activity GO 424 478 induction of programmed cell death GO 300 399 inflammatory response GO 76 inner membrane GO 62 152 inorganic anion transport GO 141 396 489 inositol/phosphatidylinositol kinase activity GO 421 534 inotropic glutamate receptor activity GO 498 insulin-like growth factor binding GO 190 474 integral to plasma membrane GO 64 integrin complex GO 275 412 integrin-mediated signaling pathway GO 275 412 interleukin-1 receptor activity GO 496 545 interleukin-1\, Type I\, activating receptor activity Tissue 496 545 interleukin binding GO 73 265 interleukin receptor activity GO 73 265 intermediate filament GO 68 298 357 intracellular transport GO 196 253 ion channel activity GO 316 415 ion transporter activity GO 62 152 ion transport GO 316 415 iron ion homeostasis GO 540 Iyer99 14 Clusters 447 Iyer99 15 Clusters 511 Iyer99 17 Clusters 54 Iyer99 31 Clusters 151 Iyer99 34 Clusters 418 455 Iyer99 44 Clusters 372 441 Iyer99 4 Clusters 418 455 Iyer99 9 Clusters 426 K422_1 Tissue 53 118 K422_2 Tissue 53 118 Kidney_1 Tissue 55 88 Kidney_2 Tissue 55 88 Kidney_3 Tissue 55 88 kinase activity GO 160 kinesin complex GO 438 533 kinetochore GO 315 large ribosomal subunit GO 83 114 151 Lessnick02 15 Clusters 104 181 242 379 Lessnick02 18 Clusters 340 Lessnick02 20 Clusters 54 Lessnick02 25 Clusters 13 41 104 181 242 379 Lessnick02 26 Clusters 181 242 379 Lessnick02 36 Clusters 104 181 242 379 Lessnick02 38 Clusters 117 Lessnick02 3 Clusters 104 181 242 379 Lessnick02 48 Clusters 379 Lessnick02 4 Clusters 83 114 151 leukotriene biosynthesis GO 326 462 ligand-gated ion channel activity GO 214 ligase activity\, forming aminoacyl-tRNA and related compounds Tissue 35 110 160 ligase activity\, forming carbon-nitrogen bonds Tissue 278 ligase activity\, forming phosphoric ester bonds Tissue 35 110 160 lipase activity GO 401 lipid catabolism GO 417 lipoprotein binding GO 557 lipoprotein biosynthesis GO 236 Liver_1 Tissue 23 55 88 Liver_2 Tissue 23 55 88 Lung_1 Tissue 5 Lung_2 Tissue 5 Lymphoblastic_molt-4_1 Tissue 53 118 Lymphoblastic_molt-4_2 Tissue 53 118 Lymphoblastic_molt-4_3 Tissue 53 118 lymphocyte activation GO 121 223 lymphocyte antigen GO 501 lymphocyte proliferation GO 521 Lysine_degradation KEGG 305 macromolecule catabolism GO 211 562 magnesium ion binding GO 471 528 main pathways of carbohydrate metabolism GO 306 MAPKKK cascade GO 173 407 465 560 MAPKKK cascade (osmolarity sensing) GO 407 465 560 Matrix Metalloproteinases GenMapp 562 membrane lipid catabolism GO 260 346 408 491 568 membrane lipid metabolism GO 346 408 491 568 mesoderm development GO 400 metal ion binding GO 324 metal ion homeostasis GO 191 262 metal ion transporter activity GO 22 62 152 metallocarboxypeptidase activity GO 231 402 492 568 metalloendopeptidase activity GO 210 562 metallopeptidase activity GO 210 562 methyltransferase activity GO 349 MHC class I receptor activity GO 144 293 345 436 microtubule associated complex GO 438 533 microtubule-based process GO 253 microtubule cytoskeleton GO 438 533 microtubule GO 395 509 mitochondrial electron transport\, NADH to ubiquinone Tissue 25 77 152 mitochondrial inner membrane GO 152 mitochondrial membrane GO 62 152 mitochondrion GO 152 mitotic anaphase GO 397 mitotic checkpoint GO 315 Monoamine GPCRs GenMapp 372 441 monocarboxylic acid transporter activity GO 0 71 186 341 411 511 monocarboxylic acid transport GO 0 71 186 341 411 511 monosaccharide binding GO 391 543 monovalent inorganic cation transporter activity GO 62 152 morphogenesis GO 220 motor activity GO 196 253 M phase GO 320 397 M phase of mitotic cell cycle GO 320 397 mRNA binding GO 183 mRNA processing GO 332 mRNA splicing GO 183 muscle contraction GO 201 329 387 512 muscle development GO 329 387 512 muscle fiber GO 202 329 387 512 Myelogenous_k-562_1 Tissue 17 52 118 Myelogenous_k-562_2 Tissue 17 52 118 NADH dehydrogenase activity GO 42 77 152 NADH dehydrogenase (ubiquinone) activity GO 42 77 152 negative regulation of cell proliferation GO 488 neurotransmitter receptor activity GO 215 neurotransmitter secretion GO 563 Nicotinate_and_nicotinamide_metabolism KEGG 303 403 451 nicotinic acetylcholine-activated cation-selective channel activity GO 216 267 328 415 nicotinic acetylcholine-gated receptor-channel complex GO 216 267 328 415 Nitrogen_metabolism KEGG 294 343 nuclear chromatin GO 89 203 552 nuclear chromosome GO 168 222 421 534 nuclear division GO 320 397 nuclear lamina GO 68 298 357 nuclear membrane GO 298 357 nuclear pore GO 352 nuclease activity GO 32 83 114 151 nucleic acid binding GO 32 83 114 151 nucleobase metabolism GO 376 450 538 nucleolar preribosome GO 525 nucleolus GO 392 457 nucleoside monophosphate biosynthesis GO 21 56 102 219 nucleoside monophosphate phosphorylation GO 116 152 nucleosome assembly GO 90 203 552 nucleosome disassembly GO 90 203 552 nucleotide binding GO 538 nucleotide biosynthesis GO 102 219 Nucleotide Metabolism GenMapp 337 397 nucleotide metabolism GO 219 nucleotide receptor activity GO 328 415 nucleotidyltransferase activity GO 244 nucleus GO 98 198 252 Nutt03 10 Clusters 501 Nutt03 14 Clusters 36 Nutt03 15 Clusters 83 114 151 Nutt03 16 Clusters 137 Nutt03 18 Clusters 400 Nutt03 23 Clusters 137 Nutt03 26 Clusters 66 100 137 Nutt03 36 Clusters 41 104 181 242 379 Nutt03 38 Clusters 104 181 242 379 Nutt03 41 Clusters 41 104 181 242 379 Nutt03 43 Clusters 13 41 104 181 242 379 Nutt03 44 Clusters 117 organellar ribosome GO 377 organic acid biosynthesis GO 327 462 organic acid metabolism GO 40 organic acid transporter activity GO 71 186 341 411 511 organic acid transport GO 186 341 411 511 organogenesis GO 220 ossification GO 400 Ovary_2 Tissue 1 Ovary_3 Tissue 1 oxidative phosphorylation GO 77 152 Oxidative_phosphorylation KEGG 62 152 oxidoreductase activity\, acting on CH-OH group of donors Tissue 286 oxidoreductase activity\, acting on paired donors\, with incorporation or reduction of molecular oxygen\, 2-oxoglutarate as one donor\, and incorporation of one atom each of oxygen into both donors Tissue 423 478 oxidoreductase activity\, acting on paired donors\, with incorporation or reduction of molecular oxygen Tissue 135 oxidoreductase activity\, acting on paired donors\, with incorporation or reduction of molecular oxygen\, reduced flavin or flavoprotein as one donor\, and incorporation of one atom of oxygen Tissue 106 135 oxidoreductase activity\, acting on single donors with incorporation of molecular oxygen Tissue 423 478 oxidoreductase activity\, acting on the aldehyde or oxo group of donors\, NAD or NADP as acceptor Tissue 194 464 oxidoreductase activity\, acting on the aldehyde or oxo group of donors Tissue 194 464 oxidoreductase activity\, acting on the CH-CH group of donors\, other acceptors Tissue 294 343 oxidoreductase activity\, acting on the CH-CH group of donors Tissue 184 221 oxidoreductase activity\, acting on the CH-NH2 group of donors Tissue 373 oxidoreductase activity\, acting on the CH-NH group of donors\, NAD or NADP as acceptor Tissue 224 272 377 oxidoreductase activity\, acting on the CH-NH group of donors Tissue 224 272 377 oxidoreductase activity\, acting on the CH-OH group of donors\, NAD or NADP as acceptor Tissue 286 oxidoreductase activity GO 93 oxygen and reactive oxygen species metabolism GO 132 310 Pancreas_1 Tissue 55 88 Pancreas_2 Tissue 55 88 pancreatic ribonuclease activity GO 467 pathogenesis GO 501 pattern specification GO 362 444 516 peptidase activity GO 209 peptide binding GO 155 245 299 355 Peptide GPCRs GenMapp 288 375 peptide hormone GO 382 peptide receptor activity GO 134 288 375 peptide receptor activity\, G-protein coupled Tissue 134 288 375 peptide transporter activity GO 162 218 368 511 perception of light GO 287 373 perception of mechanical stimulus GO 571 peripheral nervous system development GO 560 Perou00 13 Clusters 342 Perou00 17 Clusters 389 Perou00 18 Clusters 84 Perou00 22 Clusters 83 114 151 Perou00 25 Clusters 239 Perou00 28 Clusters 321 Perou00 29 Clusters 345 436 Perou00 2 Clusters 139 180 342 Perou00 31 Clusters 47 Perou00 34 Clusters 26 207 389 Perou00 35 Clusters 207 389 Perou00 36 Clusters 207 389 Perou00 39 Clusters 206 389 Perou00 40 Clusters 239 Perou00 41 Clusters 154 297 357 Perou00 42 Clusters 84 Perou00 43 Clusters 321 Perou00 45 Clusters 403 451 Perou00 46 Clusters 207 389 Perou00 49 Clusters 372 441 Perou00 6 Clusters 54 Perou00 7 Clusters 448 Perou99 10 Clusters 333 427 480 Perou99 11 Clusters 192 279 334 427 480 Perou99 13 Clusters 156 240 313 547 Perou99 14 Clusters 279 334 427 480 Perou99 15 Clusters 192 279 334 427 480 Perou99 17 Clusters 156 240 313 547 Perou99 18 Clusters 313 547 Perou99 1 Clusters 503 576 Perou99 20 Clusters 156 240 313 547 Perou99 21 Clusters 503 576 Perou99 22 Clusters 333 427 480 Perou99 23 Clusters 503 576 Perou99 24 Clusters 147 195 356 503 576 Perou99 25 Clusters 195 356 503 576 Perou99 26 Clusters 240 313 547 Perou99 27 Clusters 156 240 313 547 Perou99 28 Clusters 333 427 480 Perou99 29 Clusters 166 256 333 427 480 Perou99 2 Clusters 166 256 333 427 480 Perou99 31 Clusters 333 427 480 Perou99 33 Clusters 256 333 427 480 Perou99 35 Clusters 156 240 313 547 Perou99 36 Clusters 356 503 576 Perou99 37 Clusters 147 195 356 503 576 Perou99 38 Clusters 480 Perou99 39 Clusters 447 Perou99 3 Clusters 156 240 313 547 Perou99 41 Clusters 156 240 313 547 Perou99 42 Clusters 547 Perou99 43 Clusters 156 240 313 547 Perou99 44 Clusters 192 279 334 427 480 Perou99 45 Clusters 240 313 547 Perou99 47 Clusters 576 Perou99 48 Clusters 421 534 Perou99 49 Clusters 256 333 427 480 Perou99 4 Clusters 156 240 313 547 Perou99 5 Clusters 156 240 313 547 Perou99 6 Clusters 547 Perou99 7 Clusters 439 Perou99 8 Clusters 334 427 480 Perou99 9 Clusters 503 576 phenylalanine catabolism GO 140 phenylalanine metabolism GO 140 phosphatase regulator activity GO 226 281 371 phosphate metabolism GO 273 363 phospholipase inhibitor activity GO 390 543 phospholipid binding GO 414 phosphoric ester hydrolase activity GO 534 phosphorus metabolism GO 273 363 photosynthesis GO 43 photosynthesis\, light reaction Tissue 43 pigmentation GO 335 505 pigment biosynthesis GO 335 505 Pituitary_gland Tissue 66 100 137 Placenta_1 Tissue 38 Placenta_2 Tissue 38 Pollack99 10 Clusters 495 Pollack99 13 Clusters 533 Pollack99 22 Clusters 457 Pollack99 23 Clusters 485 Pollack99 27 Clusters 325 485 Pollack99 29 Clusters 243 Pollack99 32 Clusters 439 Pollack99 35 Clusters 342 Pollack99 44 Clusters 325 485 polysaccharide transporter activity GO 311 573 Pomeroy02 10 Clusters 111 157 242 379 Pomeroy02 12 Clusters 416 Pomeroy02 13 Clusters 111 157 242 379 Pomeroy02 14 Clusters 83 114 151 Pomeroy02 16 Clusters 500 Pomeroy02 20 Clusters 176 Pomeroy02 21 Clusters 138 174 241 291 Pomeroy02 31 Clusters 66 100 137 Pomeroy02 32 Clusters 100 137 Pomeroy02 36 Clusters 291 Pomeroy02 40 Clusters 157 242 379 Pomeroy02 41 Clusters 176 Pomeroy02 46 Clusters 497 Pomeroy02 49 Clusters 111 157 242 379 Pomeroy02 9 Clusters 113 176 pore complex GO 352 porin activity GO 63 Porphyrin_and_chlorophyll_metabolism KEGG 227 539 porter activity GO 368 511 positive regulation of cell proliferation GO 521 post-embryonic development GO 51 80 200 259 post-embryonic morphogenesis GO 51 80 200 259 potassium channel activity GO 498 potassium ion transport GO 498 P-P-bond-hydrolysis-driven transporter activity GO 283 337 397 pre-mRNA splicing factor activity GO 183 primary active transporter activity GO 283 337 397 programmed cell death GO 300 399 Propanoate_metabolism KEGG 184 221 Prostaglandin_and_leukotriene_metabolism KEGG 431 proteasome complex (sensu Eukarya) GO 91 proteasome core complex (sensu Eukarya) GO 50 91 Proteasome Degradation GenMapp 91 proteasome endopeptidase activity GO 50 91 Proteasome KEGG 28 91 protein amino acid dephosphorylation GO 498 protein biosynthesis GO 83 114 151 protein catabolism GO 211 562 protein disulfide oxidoreductase activity GO 519 protein-disulfide reduction GO 25 77 152 Protein_export KEGG 149 protein folding GO 155 245 299 355 protein kinase activity GO 199 259 protein phosphatase regulator activity GO 226 281 371 protein phosphatase type 2A activity GO 233 278 proteolysis and peptidolysis GO 107 172 209 proton-dependent oligopeptide transporter activity GO 162 218 368 511 proton transport GO 116 152 proton-transporting ATP synthase complex (sensu Eukarya) GO 414 Purine_metabolism KEGG 219 purine nucleoside monophosphate biosynthesis GO 31 56 102 219 purine nucleotide biosynthesis GO 219 purine ribonucleoside monophosphate biosynthesis GO 56 102 219 purine ribonucleoside monophosphate metabolism GO 31 56 102 219 purine ribonucleotide biosynthesis GO 102 219 Pyrimidine_metabolism KEGG 337 397 Ramaswamy01 10 Clusters 165 Ramaswamy01 12 Clusters 165 Ramaswamy01 15 Clusters 165 Ramaswamy01 18 Clusters 111 157 242 379 Ramaswamy01 22 Clusters 112 176 Ramaswamy01 25 Clusters 383 441 Ramaswamy01 26 Clusters 165 Ramaswamy01 28 Clusters 105 Ramaswamy01 29 Clusters 322 379 Ramaswamy01 32 Clusters 165 Ramaswamy01 33 Clusters 83 114 151 Ramaswamy01 34 Clusters 165 Ramaswamy01 35 Clusters 418 455 Ramaswamy01 36 Clusters 165 Ramaswamy01 37 Clusters 165 Ramaswamy01 38 Clusters 165 Ramaswamy01 3 Clusters 177 Ramaswamy01 40 Clusters 242 379 Ramaswamy01 41 Clusters 322 379 Ramaswamy01 44 Clusters 112 176 Ramaswamy01 48 Clusters 567 Ramaswamy01 4 Clusters 112 176 Ramaswamy01 5 Clusters 165 Ramaswamy01 6 Clusters 20 111 157 242 379 Ramaswamy01 8 Clusters 111 157 242 379 Ramos_1 Tissue 53 118 Ramos_2 Tissue 53 118 receptor activity GO 27 64 Reductive_carboxylate_cycle_CO2_fixation KEGG 305 regulation of catabolism GO 107 172 209 regulation of cell adhesion GO 444 516 regulation of cell growth GO 474 regulation of cell proliferation GO 488 regulation of complement activation GO 58 130 regulation of neurotransmitter levels GO 563 regulation of T-cell proliferation GO 521 regulation of transcription by pheromones GO 229 318 403 451 regulation of transcription\, DNA-dependent Tissue 197 252 regulation of translational initiation GO 81 115 149 replication fork GO 158 response to biotic stimulus GO 46 75 response to DNA damage stimulus GO 403 451 response to light GO 248 response to oxidative stress GO 530 response to pest/pathogen/parasite GO 75 response to radiation GO 248 response to stress GO 75 rhodopsin-like receptor activity GO 146 rhodopsin mediated phototransduction GO 251 367 rhodopsin mediated signaling GO 251 367 ribonuclease activity GO 360 439 ribonucleoprotein complex GO 83 114 151 ribonucleoside monophosphate biosynthesis GO 56 102 219 ribonucleoside monophosphate metabolism GO 21 56 102 219 ribonucleotide biosynthesis GO 102 219 ribonucleotide metabolism GO 219 ribosome GO 83 114 151 Ribosome KEGG 83 114 151 RNA binding GO 32 83 114 151 RNA metabolism GO 183 RNA processing GO 183 RNA splicing GO 183 Rosenwald01 11 Clusters 292 345 436 Rosenwald01 13 Clusters 525 Rosenwald01 14 Clusters 292 345 436 Rosenwald01 16 Clusters 429 484 Rosenwald01 17 Clusters 350 Rosenwald01 18 Clusters 136 179 255 317 378 459 532 Rosenwald01 19 Clusters 97 182 261 358 525 Rosenwald01 1 Clusters 136 179 255 317 378 459 532 Rosenwald01 22 Clusters 430 484 Rosenwald01 24 Clusters 69 136 179 255 317 378 459 532 Rosenwald01 25 Clusters 456 Rosenwald01 26 Clusters 459 532 Rosenwald01 27 Clusters 255 317 378 459 532 Rosenwald01 31 Clusters 188 238 301 361 436 Rosenwald01 32 Clusters 37 69 136 179 255 317 378 459 532 Rosenwald01 33 Clusters 97 182 261 358 525 Rosenwald01 34 Clusters 170 Rosenwald01 36 Clusters 169 Rosenwald01 38 Clusters 456 Rosenwald01 39 Clusters 277 358 525 Rosenwald01 3 Clusters 261 358 525 Rosenwald01 40 Clusters 238 301 361 436 Rosenwald01 42 Clusters 237 301 361 436 Rosenwald01 43 Clusters 525 Rosenwald01 45 Clusters 61 126 Rosenwald01 46 Clusters 54 Rosenwald01 48 Clusters 238 301 361 436 Rosenwald01 4 Clusters 456 Rosenwald01 50 Clusters 436 Rosenwald01 6 Clusters 79 128 170 Rosenwald01 8 Clusters 500 Rosenwald01 9 Clusters 145 188 238 301 361 436 Ross00 10 Clusters 491 568 Ross00 12 Clusters 491 568 Ross00 15 Clusters 342 Ross00 18 Clusters 332 Ross00 20 Clusters 180 342 Ross00 23 Clusters 151 Ross00 2 Clusters 418 455 Ross00 3 Clusters 180 342 Ross00 40 Clusters 455 Ross00 44 Clusters 331 Ross00 47 Clusters 525 Ross00 50 Clusters 321 Ross01 10 Clusters 372 441 Ross01 12 Clusters 342 Ross01 14 Clusters 342 Ross01 17 Clusters 389 Ross01 19 Clusters 151 Ross01 2 Clusters 337 397 Ross01 30 Clusters 485 Ross01 35 Clusters 139 180 342 Ross01 36 Clusters 207 389 Ross01 39 Clusters 154 297 357 Ross01 43 Clusters 372 441 Ross01 46 Clusters 341 411 511 Ross01 49 Clusters 331 Ross01 7 Clusters 47 Ross01 8 Clusters 342 rRNA processing GO 392 457 Salivary_gland_1 Tissue 88 Salivary_gland_2 Tissue 55 88 sarcomere GO 202 329 387 512 secretin-like receptor activity GO 470 557 secretion GO 92 secretory vesicle GO 563 sensory perception GO 123 197 252 serine protease inhibitor activity GO 164 serotonin metabolism GO 563 Shipp02 10 Clusters 112 176 Shipp02 11 Clusters 113 176 Shipp02 12 Clusters 138 174 241 291 Shipp02 13 Clusters 83 114 151 Shipp02 16 Clusters 372 441 Shipp02 20 Clusters 111 157 242 379 Shipp02 23 Clusters 112 176 Shipp02 25 Clusters 532 Shipp02 26 Clusters 177 Shipp02 27 Clusters 138 174 241 291 Shipp02 28 Clusters 105 Shipp02 2 Clusters 340 Shipp02 31 Clusters 379 Shipp02 32 Clusters 70 138 174 241 291 Shipp02 35 Clusters 176 Shipp02 37 Clusters 174 241 291 Shipp02 41 Clusters 157 242 379 Shipp02 42 Clusters 111 157 242 379 Shipp02 43 Clusters 242 379 Shipp02 45 Clusters 70 138 174 241 291 Shipp02 47 Clusters 20 111 157 242 379 Shipp02 4 Clusters 426 Shipp02 5 Clusters 105 Shipp02 8 Clusters 33 Shipp02 9 Clusters 112 176 signal sequence binding GO 245 299 355 signal transducer activity GO 64 Singh02 10 Clusters 7 41 104 181 242 379 Singh02 12 Clusters 41 104 181 242 379 Singh02 13 Clusters 13 41 104 181 242 379 Singh02 20 Clusters 13 41 104 181 242 379 Singh02 22 Clusters 83 114 151 Singh02 23 Clusters 104 181 242 379 Singh02 26 Clusters 129 Singh02 2 Clusters 13 41 104 181 242 379 Singh02 30 Clusters 383 441 Singh02 35 Clusters 204 Singh02 38 Clusters 83 114 151 Singh02 3 Clusters 13 41 104 181 242 379 Singh02 42 Clusters 7 41 104 181 242 379 Singh02 43 Clusters 204 Singh02 46 Clusters 204 Singh02 5 Clusters 13 41 104 181 242 379 Singh02 6 Clusters 104 181 242 379 Singh02 9 Clusters 36 single-stranded DNA binding GO 281 371 skeletal development GO 234 small molecule transport GO 415 small monomeric GTPase activity GO 86 small nuclear ribonucleoprotein GO 388 small nucleolar ribonucleoprotein complex GO 388 small protein conjugating enzyme activity GO 4 82 small ribosomal subunit GO 29 83 114 151 sodium ion transporter activity GO 22 62 152 Sorlie01 16 Clusters 239 Sorlie01 19 Clusters 453 Sorlie01 20 Clusters 84 Sorlie01 28 Clusters 453 Sorlie01 2 Clusters 285 366 453 Sorlie01 30 Clusters 567 Sorlie01 33 Clusters 54 Sorlie01 34 Clusters 285 366 453 Sorlie01 37 Clusters 239 Sorlie01 40 Clusters 284 366 453 Sorlie01 43 Clusters 206 389 Sorlie01 48 Clusters 47 Sorlie01 49 Clusters 342 Sorlie01 5 Clusters 284 366 453 Sorlie01 7 Clusters 26 207 389 Sorlie01 9 Clusters 207 389 S phase of mitotic cell cycle GO 125 158 sphingolipid catabolism GO 260 346 408 491 568 Spinal_cord_1 Tissue 12 Spinal_cord_2 Tissue 12 spindle GO 315 Spleen Tissue 84 spliceosome complex GO 388 Staunton01 11 Clusters 571 Staunton01 12 Clusters 213 Staunton01 15 Clusters 112 176 Staunton01 16 Clusters 470 557 Staunton01 18 Clusters 213 Staunton01 19 Clusters 372 441 Staunton01 26 Clusters 511 Staunton01 34 Clusters 213 Staunton01 38 Clusters 59 Staunton01 3 Clusters 112 176 Staunton01 40 Clusters 83 114 151 Staunton01 41 Clusters 213 Staunton01 42 Clusters 501 Staunton01 44 Clusters 213 Staunton01 45 Clusters 59 Staunton01 46 Clusters 213 Staunton01 48 Clusters 512 Staunton01 49 Clusters 242 379 Staunton01 4 Clusters 383 441 steroid binding GO 404 Sterol_biosynthesis KEGG 432 striated muscle contraction GO 201 329 387 512 striated muscle thick filament GO 201 329 387 512 structural constituent of muscle GO 201 329 387 512 structural constituent of ribosome GO 83 114 151 sugar binding GO 96 410 sulfur amino acid biosynthesis GO 354 sulfur amino acid catabolism GO 428 471 528 sulfur metabolism GO 235 symporter activity GO 218 368 511 synaptic transmission GO 274 379 synaptic vesicle GO 381 498 taxis GO 108 263 TCA Cycle GenMapp 306 T-cell activation GO 121 223 Terpenoid_biosynthesis KEGG 509 Testis_1 Tissue 72 Testis_2 Tissue 72 Thalamus_1 Tissue 11 66 100 137 Thalamus_2 Tissue 11 66 100 137 thermoregulation GO 76 THY-_1 Tissue 15 53 118 THY-_2 Tissue 15 53 118 Thymus_1 Tissue 44 84 Thymus_2 Tissue 44 84 THY+ Tissue 53 118 Trachea_1 Tissue 6 Trachea_2 Tissue 6 transcription\, DNA-dependent Tissue 124 transcription factor activity GO 372 441 transcription from Pol II promoter GO 308 transcription from Pol I promoter GO 331 transcription GO 124 transcription regulator activity GO 198 252 transferase activity\, transferring acyl groups Tissue 249 377 transferase activity\, transferring glycosyl groups Tissue 377 transferase activity\, transferring groups other than amino-acyl groups Tissue 249 377 transferase activity\, transferring one-carbon groups Tissue 349 transferase activity\, transferring pentosyl groups Tissue 377 transition metal ion binding GO 280 371 transition metal ion homeostasis GO 540 translational elongation GO 150 translational initiation GO 81 115 149 translation elongation factor activity GO 150 translation factor activity\, nucleic acid binding Tissue 159 Translation Factors GenMapp 115 149 translation initiation factor activity GO 81 115 149 translation regulator activity GO 159 translation release factor activity GO 87 transmembrane receptor activity GO 27 64 transmembrane receptor protein kinase activity GO 85 199 259 transmembrane receptor protein phosphatase activity GO 498 transmembrane receptor protein tyrosine kinase activity GO 85 199 259 transmembrane receptor protein tyrosine kinase signaling pathway GO 200 259 transmission of nerve impulse GO 379 tricarboxylic acid cycle GO 377 tRNA ligase activity GO 35 110 160 trypsin activity GO 109 tumor necrosis factor receptor binding GO 426 two-component signal transduction system (phosphorelay) GO 173 407 465 560 Tyrosine_metabolism KEGG 373 ubiquinol-cytochrome c reductase activity GO 149 Ubiquinone_biosynthesis KEGG 77 152 ubiquitin conjugating enzyme activity GO 4 82 ubiquitin cycle GO 82 Urea_cycle_and_metabolism_of_amino_groups KEGG 440 vacuolar hydrogen-transporting ATPase GO 307 vesicle coat GO 39 264 395 509 vesicle-mediated transport GO 274 379 vesicle membrane GO 381 498 viral genome GO 89 203 552 viral host cell process manipulation GO 403 451 viral host defense evasion GO 254 312 439 virion GO 89 203 552 vision GO 287 373 vitamin binding GO 404 voltage-gated ion channel activity GO 383 441 voltage-gated potassium channel complex GO 498 Whitfield02 15 Clusters 163 Whitfield02 20 Clusters 239 Whitfield02 22 Clusters 95 163 Whitfield02 34 Clusters 54 Whitfield02 45 Clusters 323 Whitfield02 46 Clusters 95 163 Whitfield02 49 Clusters 9 48 95 163 Whitfield02 8 Clusters 486 Whitfield02 9 Clusters 212 Whole_Blood_1 Tissue 45 84 Whole_Blood_2 Tissue 45 84 Whole_Blood_3 Tissue 45 84 Whole_Blood_4 Tissue 45 84 Whole_Blood_5 Tissue 45 84 Whole_Blood_6 Tissue 45 84 Whole_Brain_1 Tissue 11 66 100 137 Whole_Brain_2 Tissue 11 66 100 137 WSU_1 Tissue 53 118 WSU_2 Tissue 53 118 xenobiotic metabolism GO 247 zinc ion binding GO 280 371